Handy PEA+

Advanced continuous excitation chlorophyll fluorimeter

  • Compact (170mm x 85mm x 40mm), lightweight (565g)
  • USB 2.0 Communications
  • Large-scale screening capacity up to 1000 full-trace data files
  • High-time resolution detection for discrimination of fast chlorophyll fluorescence induction kinetics
  • Full suite of OJIP analysis parameters (Strasser et al 2000)
  • 100kHz sampling frequency with 16-bit resolution
  • Saturating high-intensity focused LED array for accurate determination of Fm
  • Upload user-defined, repeatable protocols for automatic field execution
  • Interchangeable sensor unit cables with lengths of up to 10 metres
  • Powerful Windows® data transfer & analysis software included.

Handy PEA+ Overview

Handy PEA+ Continuous Excitation Chlorophyl Fluorimeter | Hansatech Instruments | Oxygen electrode and chlorophyll fluorescence measurement systems for cellular respiration and photosynthesis researchHandy PEA+ consists of a compact, lightweight control unit encapsulating sophisticated electronics. This provides the high-time resolution which is essential in performing measurements of fast chlorophyll fluorescence induction kinetics.

Simple to configure and operate, basic measurement functionality can be defined directly on the Handy PEA+. More complex experimental design may be achieved using the Protocol Editor feature which allows up to 5 user-defined protocols to be stored in memory for different field applications. Protocols are written using a custom Windows® software package, PEA+ (supplied). A tactile keypad allows selections and inputs to be made and an LCD display module presents menu options and data.

Handy PEA+ Continuous Excitation Chlorophyl Fluorimeter | Hansatech Instruments | Oxygen electrode and chlorophyll fluorescence measurement systems for cellular respiration and photosynthesis researchThe sensor unit consists of an array of 3 ultra-bright red LEDs which are optically filtered to a peak wavelength of 650 nm (which is readily absorbed by chlorophyll) at a maximum intensity of up to 3,500 µmol m-2 s-1 at the sample surface. The LEDs are focused via lenses onto the leaf surface to provide uniform illumination over the area of leaf exposed by the leafclip (4mm dia). An optical feedback circuit monitors and corrects changes in the output intensity of the LEDs which can be caused by internal heat build-up within the LEDs themselves. The circuit also compensates for intensity changes caused by variation in ambient temperature.

The sensor unit is fitted with a high-performance PIN photodiode. Optical design and filtering ensure that it responds maximally to the longer wavelength fluorescence signal and blocks the reflected shorter wavelength LED light used as the source of illumination. Variable-rate analysis allows fluorescence signals to be sampled at different acquisition rates throughout the different phases of the induction kinetic. Initially, data is sampled at 10 µsecond intervals for the first 300 µseconds with subsequent induction phases recorded at lower sample rates as the rate of kinetic activity reduces.

Up to 1,000 recordings of between 0.1 seconds – 300 seconds may be saved in the onboard memory of the Handy PEA+. Calculated parameters may be viewed onscreen with more comprehensive data display achieved by transferring saved data via USB to a PC where the supplied PEA+ Windows® software allows a variety of numerical and graphical presentation options.

Leafclips & Sample Dark Adaptation

Pocket PEA & Handy PEA+ Leafclips (HPEA/LC, PPEA/LC) | Hansatech Instruments | Oxygen electrode and chlorophyll fluorescence measurement systems for cellular respiration and photosynthesis research

Continuous excitation fluorescence systems like Pocket PEA, Handy PEA+ and M-PEA rely on the use of a suitable leafclip system with 2 functions. Firstly, the leafclip shields the fluorescence detector from ambient light which would otherwise “blind” the sensor due to the comparatively high levels of red/infrared light within the same waveband as the fluorescence itself. Secondly, the leafclip pre-conditions or dark adapts a section of the sample prior to the measurement.

Any measurement of the maximum photochemical efficiency of Photosystem II (Fv/Fm) requires the sample to be fully dark adapted prior to measurement. During dark adaptation, all reaction centers within the sample are fully oxidised making them available for photochemistry and any latent chlorophyll fluorescence yield is quenched. This process takes a variable amount of time and depends upon plant species, light history prior to the dark transition and whether or not the plant is stressed. Typically, 15 – 20 minutes may be required to dark adapt effectively.

Dark adaptation leafclips are constructed from plastic making them small and lightweight. The locating ring (which interfaces with the fluorimeter sensor) is positioned over the required area of the sample and has a central 4mm diameter hole which is covered using a shutter-plate. During measurement, this shutter slides back to expose the dark adapted sample to the focused LEDs and fluorescence detector. Pocket PEA leafclips have a black-coloured locating ring whereas Handy PEA+ and M-PEA leafclips have a white locating ring with a silvered underside which reflects incident light and minimises the build-up of heat on the sample. This ensures that the measurement is unaffected when measuring in high ambient light conditions.

PEA+ Software

PEA+ is a multi-function Windows® program supplied with Pocket PEA and Handy PEA+ for system configuration, data acquisition and post-measurement analysis.

Several different data presentation techniques have been combined in order to effectively demonstrate subtle differences in the fluorescence signature of samples which could be indicative of stress factors affecting the photosynthetic efficiency of the plant. Data may be presented in graphical, tabulated or radial plots which can all be tailored to display any number of the 58 parameters measured by both Pocket PEA and Handy PEA+. Transferred data may be exported to CSV format for further statistical analysis in external software packages.

PEA+ allows enhanced configuration of the Handy PEA+ via the Protocol Editor feature. Protocols may be defined to include single or multiple-measurement assays with optional pre-illumination periods which can then be uploaded to the memory of Handy PEA+ via USB communications. The use of protocols ensures maximum reproducibility of results during field applications involving large-scale screening away from a laboratory environment.

PEA+ will run on all supported Microsoft® operating systems.

Common Continuous Excitation Fluorescence Parameters Measured

Common Continuous Excitation Fluorescence Parameters Measured | Hansatech Instruments | Oxygen electrode and chlorophyll fluorescence measurement systems for cellular respiration and photosynthesis research
Fo – Represents emission by excited chlorophyll a molecules in the antennae structure of Photosystem II. The true Fo level is only observed when the first stable electron acceptor of Photosystem II called Q_A is fully oxidised. This requires thorough dark adaptation.

Fm – The maximum fluorescence value obtained for a continuous light intensity. This parameter may only be termed as maximal if the light intensity used is fully saturating and the electron acceptor Q_A is fully reduced.

Fv – Indicates the variable component of the recording and relates to the maximum capacity for photochemical quenching. Calculated by subtracting the Fo value from the Fm value (Fm - Fo).

Fv/Fm – An indication of the maximum quantum efficiency of Photosystem II and widely considered to be a sensitive indicator of plant photosynthetic performance. Presented as a ratio between 0 and 1, healthy samples typically achieve a maximum Fv/Fm value of approx. 0.85. Values lower than this will be observed if a sample has been exposed to some type of biotic or abiotic stress factor which has reduced the capacity for photochemical quenching within PSII. Fv/Fm is presented as a ratio of variable fluorescence (Fv) over the maximum fluorescence value (Fm) and is calculated as (Fm - Fo)/Fv.

Tfm – Indicates the time at which the maximum fluorescence value (Fm) was reached. May be used to indicate sample stress which causes the Fm to be reached much earlier than expected.

Area – The area above the fluorescence curve between Fo and Fm is proportional to the pool size of the electron acceptors Q_A on the reducing side of Photosystem II. If electron transfer from the reaction centers to the quinone pool is blocked (such as is the mode of action of the photosynthetically active herbicide DCMU), the area will be dramatically reduced.

Time Marks Parameters

The PEA Plus and M-PEA Plus software packages extract chlorophyll fluorescence values from the recorded data from Handy PEA+, Pocket PEA and M-PEA chlorophyll fluorimeters at 5 pre-defined Time Marks. The times are:

  • T1 = 50 microseconds
  • T2 = 100 microseconds
  • T3 = (K step) 300 microseconds
  • T4 = (J step) 2 milliseconds
  • T5 = (I step) 30 milliseconds

Chlorophyll fluorescence values at these Time Marks are used to derive a series of further biophysical parameters, all referring to time base 0 (onset of fluorescence induction), that quantify the photosystem II behaviour for (A) The specific energy fluxes (per reaction center) for:

  • Absorption (Abs/RC)
  • Trapping (TRo/RC)
  • Dissipation (DIo/CS)
  • Electron transport (ETo/RC)

and (B) the flux ratios or yields:

  • Maximum yield of primary photochemistry (\Phi Eo = TRo/ABS)
  • Efficiency (\Psi o=Eto/Tro) with which a trapped exciton can move an electron into the electron transport chain further than Q_{A-}
  • Quantum yield of electron transport (Eto/CS)

The concentration of active PSII reaction centers per excited cross section (RC/CS) is also calculated.

Performance Index Parameters (OJIP Analysis)

The Performance Index (PI) is essentially an indicator of sample vitality. It is an overall expression indicating a kind of internal force of the sample to resist constraints from outside. It is a Force in the same way that redox potential in a mixture of redox couples is a force. Exactly the PI is a force if used on a log scale. Therefore we say:

log PI = Driving~Force~DF

PI is derived according to the Nernst equation. It is the equation which describes the forces of redox reactions and general movements of Gibbs free Energy in biochemical systems. Such a force (or potential = force) is defined as:-

Potential = log x/(1-x)

where x is the fraction of a partner in the reaction A to B. Therefore:

X = A /(A + B)

and if you now convert to:

X/(1-X) = A / B

or for redox reactions

log (red)/(ox)

Now the total potential in a mixture is the sum of the individual potentials or:

Potential~total = log X1/(1-X1) + log X2/(1-X2) ….etc

In our case PI (on an absorption basis or on a chlorophyll basis) has three components:

The first component shows the force due to the concentration of active reaction centers

X1 = RC~Chlorophyll~per~total~chlorophyll = CHL(RC)/CHL(total)


X1/(1-X1) = CHL(RC) / ( CHL(tot) - CHL(RC)) = CHL(RC) / CHL(antenna) = RC/ABS

RC/ABS is a parameter of the JIP test and it is related to the force generated by the RC concentration per antenna chlorophyll.

The second component is the force of the light reactions, which is related to the quantum yield of primary photochemistry:

\Phi(Po) = maxTrapping / Absorption = TRo/ABS = Fv/Fm

The driving force of the light reactions is therefore:

DF(\Phi(Po)) = log PHI/(1 - \Phi) = log (Fv/Fm) / ( 1 - Fv/Fm) = log Fv/Fo = log kP/kN

The third component is the force related to the dark reactions (after Q_{A-}). These are normal redox reactions in the dark.Expressed by the JIP test as:

\Psi(o) = ETo/TRo = (1 - Vj)

Where Vj = relative variable fluorescence at 2 ms or at the step J therefore:

Vj = (Fj - Fo)/(Fm - Fo)~and~\Psi(o) = 1 - Vj = (Fm - Fj) / (Fm - Fo)

Therefore the force of the dark reactions is:

DF(\Psi) = log \Psi/(1-\Psi) = log (1-Vj)/Vj

Now all three components together make:

DF (total~on~a~chl~basis) = DF(RC) + DF(\Phi) + DF(\Psi)

or without log

PI(abs) = RC/ABS \times \Phi/(1-\Phi) \times \Psi/(1-\Psi)

or in fluorescence terms:

PI(abs) = ((dV/dto)/Vj) \times Fm/Fv \times (Fv/Fo) \times (Fm-Fj)/(Fj-Fo)

A more detailed derivation and explanation is beyond the scope and intention of this web page. Further detailed information may be obtained from the following publications which may be downloaded as PDF documents from the following links.

R.J. Strasser, A. Srivastava and M. Tsimilli-Michael
The fluorescence transient as a tool to characterize and screen photosynthetic samples.

Strasser, R.J., M. Tsimilli-Michael and Srivastava, A.
Analysis of the Fluorescence Transient.


All Parameters Measured

  • OJIP data:
    • tFm
    • Area
    • Fo
    • Fm
    • Fv
  • Normalised data:
    • Fo/Fm
    • Fv/Fm
    • Fv/Fo
    • Vj = (Fj-Fo)/(Fm-Fo)
    • Vi = (Fi-Fo)/(Fm-Fo)
  • Specific fluxes:
    • ABS/RC
    • DIo/RC
    • TRo/RC
    • ETo/RC
    • REo/RC
  • Apparent fluxes per CSo:
    • ABS/RC
    • DIo/RC
    • TRo/RC
    • ETo/RC
    • REo/RC
  • Partial performances:
    • \Gamma(RC)/(1-\Gamma(RC))
    • \Phi(Po)/(1-\Phi(Po))
    • \Psi(Eo)/(1-\Psi(Eo))
    • PI(abs)
    • \Delta(Ro)/(1-\Delta(Ro))
  • Time marks:
    • Ft1
    • Ft2
    • Ft3
    • Ft4
    • Ft5
  • Partial areas:
    • Fo to Ft1
    • Ft1 to Ft3
    • Ft1 to Ft4
    • Ft1 to Ft5
    • Ft3 to Ft4
    • Ft4 to Ft5
    • Ft5 to Fm
  • Slopes & integrals:
    • dVg/dto
    • dV/dto
    • Sm = Area/Fv
    • N = Sm/Ss
    • Sm/tFm
  • Yield = flux ratios:
    • TRo/ABS = \Phi(Po)
    • ETo/TRo = \Psi(Eo)
    • ETo/ABS = \Phi(Eo)
    • REo/ETo = \Delta(Ro)
    • REo/ABS = \Phi(Ro)
  • Apparent fluxes per CSm:
    • (ABS/CSm)~Fm
    • DIo/CSm
    • TRo/CSm
    • ETo/CSm
    • REo/CSm
  • Total performance, driving force & rates:
    • PI(total)
    • DF(abs)
    • DF(total)
    • kP/ABS \times kF
    • kN/ABS \times kF
  • User parameter:
    • 3 User-entered values

System Components

Handy PEA+ is supplied with the following components:

  • Handy PEA+ control unit and sensor
  • HPEA/LC x 2: (20 leafclips)
  • Mains-powered battery charger
  • Protective carry bag
  • USB data transfer cable
  • USB Drive containing PEA+ software and manuals.

Technical Specifications

  • Dimensions: 170mm (l) x 85mm (w) x 40mm (d). Weight 565g
  • Communications: USB 2.0
  • Operating conditions: 0°C – 40°C. Non-condensing humidity
  • Battery: 3 x rechargeable Ni-MH 3.6V, 1.8Ahr
  • Battery charger:
    • Integral switch mode charger
    • Input voltage – 100V-240V, 50-60Hz
    • Output voltage – 12V DC
    • Output current- 3 amps
  • Display: 8-line x 20-character LCD display
  • Illumination:
    • A focused array of ultra-bright red LED’s with NIR short-pass cut-off filters
    • Peak wavelength 650 nm
    • Spectral-line half-width 22 nm
  • Max. intensity at sample: Up to 3,500 μmol m-2 s-1
  • Detector: Fast-response PIN photodiode with RG9 long-pass filter
  • Electronics:
    • 16-bit microprocessor
    • 12-bit resolution
    • A/D 10μsec acquisition rate
    • 8-bit DAC for light control
    • Real-time clock
  • Record Length: 0.1 seconds – 300 seconds
  • Memory: 512K battery-backed RAM. (Up to 1,000 one second duration recordings with full trace data)
  • Leafclips: 20 x injection moulded clip system with silvered locating ring, 4mm sample aperture and sliding


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Use the tool below to enter search terms as required. As an example, hansatech instruments Handy PEA+ has already been entered into the search box. Press the "Search" button to view the Google Scholar results for this search string.

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